links: Google Scholar or ResearchGate
In Review / Preprints
Quinn T. P., Pess G. R., Sutherland B. J. G., Brenkman S. J., Withler R. E., Flynn K., Beacham T. D. (in review). Resumption of anadromy or colonization from afar? Sources of sockeye salmon Oncorhynchus nerka in the Elwha River after dam removal.
Published Work
2020
26. Esenkulova S., Sutherland B. J. G., Tabata A., Haigh N., Pearce C. M., Miller K. M. (2020). Operational taxonomic unit comparing metabarcoding and morphological approaches to identify phytoplankton taxa associated with harmful algal blooms. FACETS. 5(1): 784-811. Journal, PDF
25. Sutherland B. J. G., Candy J., Mohns K., Cornies O., Jonsen K., Le K., Gustafson R. G., Nichols K. M., Beacham T.D (2020). Population structure of eulachon Thaleichthys pacificus from Northern California to Alaska using single nucleotide polymorphisms from direct amplicon sequencing. Canadian Journal of Fisheries and Aquatic Sciences. online early PDF
24. Akbarzadeh A., Houde A-L. S., Sutherland B. J. G., Gunther O. P., Miller K.M. 2020. Identification of hypoxia-specific biomarkers in salmonids using RNA-sequencing and validation using high-throughput qPCR. G3 - Genes|Genomes|Genetics. 10(9), 3321-3336. Journal
23. Blumstein D. M., Campbell M. A., Hale M. C., Sutherland B. J. G., McKinney, G. J., Stott W., Larson W.A. Comparative genomic analyses and a novel linkage map for cisco (Coregonus artedi) provides insight into chromosomal evolution and rediploidization across salmonids. 2020 G3 - Genes|Genomes|Genetics. 10(8), 2863-2878. Journal
22. Beacham T.D., Jonsen K.M., McIntosh B., Sutherland B.J.G., Willis D., Lynch C., Wallace C.G. Large-scale parentage-based tagging and genetic stock identification applied in assessing mixed-stock fisheries and hatchery broodstocks for coho salmon in British Columbia, Canada. 2020. Canadian Journal of Fisheries and Aquatic Sciences. Early online June 6, 2020; Journal
21. Sutherland B. J. G., Rycroft C., Ferchaud A.-L., Saunders R., Li L., Liu S., Chan A., Otto S., Suttle C., Miller K.M, 2020. Relative genomic impacts of translocation history, hatchery practices, and farm selection in Pacific oyster Crassostrea gigas throughout the Northern Hemisphere. Evolutionary Applications. 13: 1380–1399. Journal
26. Esenkulova S., Sutherland B. J. G., Tabata A., Haigh N., Pearce C. M., Miller K. M. (2020). Operational taxonomic unit comparing metabarcoding and morphological approaches to identify phytoplankton taxa associated with harmful algal blooms. FACETS. 5(1): 784-811. Journal, PDF
25. Sutherland B. J. G., Candy J., Mohns K., Cornies O., Jonsen K., Le K., Gustafson R. G., Nichols K. M., Beacham T.D (2020). Population structure of eulachon Thaleichthys pacificus from Northern California to Alaska using single nucleotide polymorphisms from direct amplicon sequencing. Canadian Journal of Fisheries and Aquatic Sciences. online early PDF
24. Akbarzadeh A., Houde A-L. S., Sutherland B. J. G., Gunther O. P., Miller K.M. 2020. Identification of hypoxia-specific biomarkers in salmonids using RNA-sequencing and validation using high-throughput qPCR. G3 - Genes|Genomes|Genetics. 10(9), 3321-3336. Journal
23. Blumstein D. M., Campbell M. A., Hale M. C., Sutherland B. J. G., McKinney, G. J., Stott W., Larson W.A. Comparative genomic analyses and a novel linkage map for cisco (Coregonus artedi) provides insight into chromosomal evolution and rediploidization across salmonids. 2020 G3 - Genes|Genomes|Genetics. 10(8), 2863-2878. Journal
22. Beacham T.D., Jonsen K.M., McIntosh B., Sutherland B.J.G., Willis D., Lynch C., Wallace C.G. Large-scale parentage-based tagging and genetic stock identification applied in assessing mixed-stock fisheries and hatchery broodstocks for coho salmon in British Columbia, Canada. 2020. Canadian Journal of Fisheries and Aquatic Sciences. Early online June 6, 2020; Journal
21. Sutherland B. J. G., Rycroft C., Ferchaud A.-L., Saunders R., Li L., Liu S., Chan A., Otto S., Suttle C., Miller K.M, 2020. Relative genomic impacts of translocation history, hatchery practices, and farm selection in Pacific oyster Crassostrea gigas throughout the Northern Hemisphere. Evolutionary Applications. 13: 1380–1399. Journal
2019
20. Baillie S. M., McGowan C., May-McNally S., Leggatt R., Sutherland B. J. G., Robinson S., 2019. Environmental DNA and its application to Fisheries and Oceans Canada: National needs and priorities. Canadian Technical Report of Fisheries and Aquatic Sciences. 3329. Web and pdf
19. Sutherland B. J. G., Prokkola J. M., Audet C., Bernatchez L., 2019. Sex-specific co-expression networks and sex-biased gene expression in the salmonid Brook Charr Salvelinus fontinalis. G3 - Genes|Genomes|Genetics. 9(3), 955-968. Journal & pdf
2017
18. Moore J.-S., Harris L. N., Le Luyer J., Sutherland B. J. G., Rougemont Q., Tallman R. F., Fisk A. T., Bernatchez L., (2017) Genomics and telemetry suggest a role for migration harshness in determining overwintering habitat choice, but not gene flow, in anadromous Arctic Char. Mol. Ecol. 26(24), 6784-6800. Journal & Preprint
17. Poley JD*, Sutherland BJG*, Fast MD, Koop BF and Jones SRM (2017). Effects of the vertically transmitted microsporidian Facilispora margolisi and the parasiticide emamectin benzoate on salmon lice (Lepeophtheirus salmonis). BMC Genomics. 18, 630. *equal contribution pdf
16. Benestan L, Moore J-S, Sutherland BJG, Le Luyer J, Maaroufi H, Rougeux C, Normandeau E, Rycroft N, Atema J, N Harris Les, Tallman RF, Greenwood SJ, Clark KF, Bernatchez L, (2017). Sex matters in Massive Parallel Sequencing: Evidence for biases in genetic parameter estimation and investigation of sex determination systems. Molecular Ecology (from the cover). doi: 10.1111/mec.14217 pdf
15. Sutherland BJG, Rico C, Audet C and Bernatchez L (2017). Sex chromosome evolution, heterochiasmy and physiological QTL in the salmonid Brook Charr Salvelinus fontinalis. G3: Genes|Genomes|Genetics. 7(8), 2749-2762. https://doi.org/10.1534/g3.117.040915 pdf
14. Sutherland BJG*, Covello JM, Friend SE, Poley JD, Koczka KW, Purcell SL, MacLeod TL, Donovan BR, Pino J, González Vecino JL, Gonzalez J, Troncosco J, Koop BF, Wadsworth SL and Fast MD (2017). Host-parasite transcriptomics during immunostimulant enhanced rejection of salmon lice Lepeophtheirus salmonis by Atlantic Salmon Salmo salar. FACETS 2, 477-495. doi: 10.1139/facets-2017-0020. pdf
13. Narum SR, Gallardo P, Correa C, Matala A, Hasselman D, Sutherland BJG and Bernatchez L (2017). Genomic patterns of diversity and divergence of two introduced salmonid species in Patagonia, South America. Evolutionary Applications, 10(4), 402-416. doi:10.1111/eva.12464. pdf
12. Braden LM, Sutherland BJG, Koop BF and Jones SRM (2017). Enhanced transcriptomic responses in the Pacific salmon louse Lepeophtheirus salmonis oncorhynchi to the non-native Atlantic Salmon Salmo salar, suggests increased parasite fitness. BMC Genomics 18, 110. pdf
20. Baillie S. M., McGowan C., May-McNally S., Leggatt R., Sutherland B. J. G., Robinson S., 2019. Environmental DNA and its application to Fisheries and Oceans Canada: National needs and priorities. Canadian Technical Report of Fisheries and Aquatic Sciences. 3329. Web and pdf
19. Sutherland B. J. G., Prokkola J. M., Audet C., Bernatchez L., 2019. Sex-specific co-expression networks and sex-biased gene expression in the salmonid Brook Charr Salvelinus fontinalis. G3 - Genes|Genomes|Genetics. 9(3), 955-968. Journal & pdf
2017
18. Moore J.-S., Harris L. N., Le Luyer J., Sutherland B. J. G., Rougemont Q., Tallman R. F., Fisk A. T., Bernatchez L., (2017) Genomics and telemetry suggest a role for migration harshness in determining overwintering habitat choice, but not gene flow, in anadromous Arctic Char. Mol. Ecol. 26(24), 6784-6800. Journal & Preprint
17. Poley JD*, Sutherland BJG*, Fast MD, Koop BF and Jones SRM (2017). Effects of the vertically transmitted microsporidian Facilispora margolisi and the parasiticide emamectin benzoate on salmon lice (Lepeophtheirus salmonis). BMC Genomics. 18, 630. *equal contribution pdf
16. Benestan L, Moore J-S, Sutherland BJG, Le Luyer J, Maaroufi H, Rougeux C, Normandeau E, Rycroft N, Atema J, N Harris Les, Tallman RF, Greenwood SJ, Clark KF, Bernatchez L, (2017). Sex matters in Massive Parallel Sequencing: Evidence for biases in genetic parameter estimation and investigation of sex determination systems. Molecular Ecology (from the cover). doi: 10.1111/mec.14217 pdf
15. Sutherland BJG, Rico C, Audet C and Bernatchez L (2017). Sex chromosome evolution, heterochiasmy and physiological QTL in the salmonid Brook Charr Salvelinus fontinalis. G3: Genes|Genomes|Genetics. 7(8), 2749-2762. https://doi.org/10.1534/g3.117.040915 pdf
14. Sutherland BJG*, Covello JM, Friend SE, Poley JD, Koczka KW, Purcell SL, MacLeod TL, Donovan BR, Pino J, González Vecino JL, Gonzalez J, Troncosco J, Koop BF, Wadsworth SL and Fast MD (2017). Host-parasite transcriptomics during immunostimulant enhanced rejection of salmon lice Lepeophtheirus salmonis by Atlantic Salmon Salmo salar. FACETS 2, 477-495. doi: 10.1139/facets-2017-0020. pdf
13. Narum SR, Gallardo P, Correa C, Matala A, Hasselman D, Sutherland BJG and Bernatchez L (2017). Genomic patterns of diversity and divergence of two introduced salmonid species in Patagonia, South America. Evolutionary Applications, 10(4), 402-416. doi:10.1111/eva.12464. pdf
12. Braden LM, Sutherland BJG, Koop BF and Jones SRM (2017). Enhanced transcriptomic responses in the Pacific salmon louse Lepeophtheirus salmonis oncorhynchi to the non-native Atlantic Salmon Salmo salar, suggests increased parasite fitness. BMC Genomics 18, 110. pdf
2016 & earlier
11. Sutherland BJG, Gosselin T, Normandeau E, Lamothe M, Isabel N, Audet C, Bernatchez L. (2016). Salmonid chromosome evolution as revealed by a novel method for comparing RADseq linkage maps. Genome Biology and Evolution 8(12), 3600-3617. pdf
10. Poley JD, Sutherland BJG, Jones SRM, Koop BF and Fast MD (2016). Sex-biased gene expression and sequence conservation in Atlantic and Pacific salmon lice Lepeophtheirus salmonis. BMC Genomics 17, 483. pdf
11. Sutherland BJG, Gosselin T, Normandeau E, Lamothe M, Isabel N, Audet C, Bernatchez L. (2016). Salmonid chromosome evolution as revealed by a novel method for comparing RADseq linkage maps. Genome Biology and Evolution 8(12), 3600-3617. pdf
10. Poley JD, Sutherland BJG, Jones SRM, Koop BF and Fast MD (2016). Sex-biased gene expression and sequence conservation in Atlantic and Pacific salmon lice Lepeophtheirus salmonis. BMC Genomics 17, 483. pdf
9. Müller A, Sutherland BJG, Koop BF, Johnson SC, Garver KA (2015). Infectious hematopoietic virus (IHNV) persistence in Sockeye Salmon: influence on brain transcriptome and subsequent response to the viral mimic poly I:C. BMC Genomics 16, 634. pdf
8. Sutherland BJG, Poley JD, Igboeli OO, Jantzen JR, Fast MD, Koop BF, Jones SRM (2015). Transcriptomic responses to emamectin benzoate in Pacific and Atlantic Canada salmon lice Lepeophtheirus salmonis with differing levels of drug resistance. Evolutionary Applications 8(2), 133-148. pdf
7. Sutherland BJG, Hanson KC, Jantzen JR, Koop BF and Smith CT (2014). Divergent immunity and energetic programs in the gills of migratory and resident Oncorhynchus mykiss. Molecular Ecology 23(8), 1952-1964. pdf
6. Sutherland BJG, Koczka KW, Yasuike M, Jantzen SG, Yazawa, R, Koop BF and Jones SRM (2014). Comparative transcriptomics of Atlantic Salmo salar, chum Oncorhynchus keta and pink salmon O. gorbuscha during infections with salmon lice Lepeophtheirus salmonis. BMC Genomics 15, 200. pdf
5. Sahlmann C, Sutherland BJG, Kortner TM, Koop BF, Krogdahl A, Bakke AM (2013) Early response of gene expression in the distal intestine of Atlantic salmon (Salmo salar L.) during the development of soybean meal induced enteritis. Fish & Shellfish Immunology 34, 599-609. pdf
4. Sutherland BJG, Jantzen SG, Yasuike M, Sanderson DS, Koop BF, Jones SRM (2012) Transcriptomics of coping strategies in free-swimming Lepeophtheirus salmonis (Copepoda) larvae responding to abiotic stress. Molecular Ecology 21, 6000-6014. pdf
3. Jantzen SG*, Sutherland BJG*, Minkley DR, Koop BF (2011) GO Trimming: Systematically reducing redundancy in large Gene Ontology datasets. BMC Research Notes 4, 267. pdf *equal contribution
2. Pavey SA, Sutherland BJG, Leong J, et al. (2011) Ecological transcriptomics of lake-type and riverine sockeye salmon (Oncorhynchus nerka). BMC Ecology 11, 31. pdf
1. Sutherland BJG, Jantzen SG, Sanderson DS, Koop BF, Jones SRM (2011) Differentiating size-dependent responses of juvenile pink salmon (Oncorhynchus gorbuscha) to sea lice (Lepeophtheirus salmonis) infections. Comparative Biochemistry and Physiology D- Genomics & Proteomics 6, 213-223. pdf
8. Sutherland BJG, Poley JD, Igboeli OO, Jantzen JR, Fast MD, Koop BF, Jones SRM (2015). Transcriptomic responses to emamectin benzoate in Pacific and Atlantic Canada salmon lice Lepeophtheirus salmonis with differing levels of drug resistance. Evolutionary Applications 8(2), 133-148. pdf
7. Sutherland BJG, Hanson KC, Jantzen JR, Koop BF and Smith CT (2014). Divergent immunity and energetic programs in the gills of migratory and resident Oncorhynchus mykiss. Molecular Ecology 23(8), 1952-1964. pdf
6. Sutherland BJG, Koczka KW, Yasuike M, Jantzen SG, Yazawa, R, Koop BF and Jones SRM (2014). Comparative transcriptomics of Atlantic Salmo salar, chum Oncorhynchus keta and pink salmon O. gorbuscha during infections with salmon lice Lepeophtheirus salmonis. BMC Genomics 15, 200. pdf
5. Sahlmann C, Sutherland BJG, Kortner TM, Koop BF, Krogdahl A, Bakke AM (2013) Early response of gene expression in the distal intestine of Atlantic salmon (Salmo salar L.) during the development of soybean meal induced enteritis. Fish & Shellfish Immunology 34, 599-609. pdf
4. Sutherland BJG, Jantzen SG, Yasuike M, Sanderson DS, Koop BF, Jones SRM (2012) Transcriptomics of coping strategies in free-swimming Lepeophtheirus salmonis (Copepoda) larvae responding to abiotic stress. Molecular Ecology 21, 6000-6014. pdf
3. Jantzen SG*, Sutherland BJG*, Minkley DR, Koop BF (2011) GO Trimming: Systematically reducing redundancy in large Gene Ontology datasets. BMC Research Notes 4, 267. pdf *equal contribution
2. Pavey SA, Sutherland BJG, Leong J, et al. (2011) Ecological transcriptomics of lake-type and riverine sockeye salmon (Oncorhynchus nerka). BMC Ecology 11, 31. pdf
1. Sutherland BJG, Jantzen SG, Sanderson DS, Koop BF, Jones SRM (2011) Differentiating size-dependent responses of juvenile pink salmon (Oncorhynchus gorbuscha) to sea lice (Lepeophtheirus salmonis) infections. Comparative Biochemistry and Physiology D- Genomics & Proteomics 6, 213-223. pdf
Falls of Shin, Lairg, Scotland
© Ben J G Sutherland 2018 All rights reserved
