links: Google Scholar or ResearchGate
In Review / Preprints
34. Raap M., Gurney-Smith H. J., Dudas, S. E., Pearce C. M., Leong J. S., Sutherland B. J. G., Koop B. F. (preprint) Effects of ancient anthropogenic clam gardens on the growth, survival, and transcriptome of the Pacific littleneck clams (Leukoma staminea). Preprint.
Pacific littleneck clam photo by Monique Raap
2022
33. Sutherland B. J. G.*, Finke J. F.*, Saunders R., Warne S., Schulze A. D., Strohm J. H. T., Chan A. M., Suttle C. A., Miller K. M. (online early). Metatranscriptomics reveals a shift in microbial community composition and function during summer months in a coastal marine environment. Environmental DNA. Journal.
* equal contribution
32. Connors B. M., Siegle M. R., Harding J., Rossi S., Staton B. A., Jones M. L., Bradford M. J., Brown R., Bechtol W., Doherty B., Cox S., Sutherland B. J. G. (online early). Chinook salmon diversity contributes to fishery stability and trade-offs with mixed-stock harvest. Ecological Applications. Journal.
31. Beacham T. D., Jonsen K., Sutherland B. J. G., Ramshaw B., Rondeau E. B. (2022). Parentage-based tagging and genetic stock identification applied to assessment of mixed-stock fisheries and hatchery broodstocks for Chinook salmon in British Columbia, Canada. 253:106369. Fisheries Research. Journal.
30. Beacham T. D., Jonsen K., Sutherland B. J. G., Lynch C., Rondeau E. (2022). Assessment of mixed-stock fisheries and hatchery broodstocks for coho salmon in British Columbia, Canada via parentage-based tagging and genetic stock identification. 245:106136. Fisheries Research. Journal.
2021
29. Venney C. J., Sutherland B. J. G., Beacham T. D., Heath D. D. (2021). Population differences in Chinook salmon (Oncorhynchus tshawytscha) DNA methylation: genetic drift and environmental factors. 11:6846-6861. Ecology & Evolution. Journal.
28. Beacham T. D., Wallace C., Jonsen K., Sutherland B. J. G., Gummer C., Rondeau E. (2021). Estimation of Conservation Unit and population contribution to Chinook salmon mixed-stock fisheries in British Columbia, Canada using direct DNA sequencing for single nucleotide polymorphisms. Canadian Journal of Fisheries and Aquatic Sciences. 78(10), 1422-1434. Journal.
27. Quinn T. P., Pess G. R., Sutherland B. J. G., Brenkman S. J., Withler R. E., Flynn K., Beacham T. D. (2021). Resumption of anadromy or straying? Origins of Sockeye Salmon Oncorhynchus nerka in the Elwha River. Transactions of the American Fisheries Society. 150(4), 452-464. Journal.
33. Sutherland B. J. G.*, Finke J. F.*, Saunders R., Warne S., Schulze A. D., Strohm J. H. T., Chan A. M., Suttle C. A., Miller K. M. (online early). Metatranscriptomics reveals a shift in microbial community composition and function during summer months in a coastal marine environment. Environmental DNA. Journal.
* equal contribution
32. Connors B. M., Siegle M. R., Harding J., Rossi S., Staton B. A., Jones M. L., Bradford M. J., Brown R., Bechtol W., Doherty B., Cox S., Sutherland B. J. G. (online early). Chinook salmon diversity contributes to fishery stability and trade-offs with mixed-stock harvest. Ecological Applications. Journal.
31. Beacham T. D., Jonsen K., Sutherland B. J. G., Ramshaw B., Rondeau E. B. (2022). Parentage-based tagging and genetic stock identification applied to assessment of mixed-stock fisheries and hatchery broodstocks for Chinook salmon in British Columbia, Canada. 253:106369. Fisheries Research. Journal.
30. Beacham T. D., Jonsen K., Sutherland B. J. G., Lynch C., Rondeau E. (2022). Assessment of mixed-stock fisheries and hatchery broodstocks for coho salmon in British Columbia, Canada via parentage-based tagging and genetic stock identification. 245:106136. Fisheries Research. Journal.
2021
29. Venney C. J., Sutherland B. J. G., Beacham T. D., Heath D. D. (2021). Population differences in Chinook salmon (Oncorhynchus tshawytscha) DNA methylation: genetic drift and environmental factors. 11:6846-6861. Ecology & Evolution. Journal.
28. Beacham T. D., Wallace C., Jonsen K., Sutherland B. J. G., Gummer C., Rondeau E. (2021). Estimation of Conservation Unit and population contribution to Chinook salmon mixed-stock fisheries in British Columbia, Canada using direct DNA sequencing for single nucleotide polymorphisms. Canadian Journal of Fisheries and Aquatic Sciences. 78(10), 1422-1434. Journal.
27. Quinn T. P., Pess G. R., Sutherland B. J. G., Brenkman S. J., Withler R. E., Flynn K., Beacham T. D. (2021). Resumption of anadromy or straying? Origins of Sockeye Salmon Oncorhynchus nerka in the Elwha River. Transactions of the American Fisheries Society. 150(4), 452-464. Journal.
2020
26. Esenkulova S., Sutherland B. J. G., Tabata A., Haigh N., Pearce C. M., Miller K. M. (2020). Comparing metabarcoding and morphological approaches to identify phytoplankton taxa associated with harmful algal blooms. FACETS. 5(1): 784-811. Journal, PDF
25. Sutherland B. J. G., Candy J., Mohns K., Cornies O., Jonsen K., Le K., Gustafson R. G., Nichols K. M., Beacham T.D (2020). Population structure of eulachon Thaleichthys pacificus from Northern California to Alaska using single nucleotide polymorphisms from direct amplicon sequencing. Canadian Journal of Fisheries and Aquatic Sciences. 78(1), 78-89. Journal
24. Akbarzadeh A., Houde A-L. S., Sutherland B. J. G., Gunther O. P., Miller K.M. 2020. Identification of hypoxia-specific biomarkers in salmonids using RNA-sequencing and validation using high-throughput qPCR. G3 - Genes|Genomes|Genetics. 10(9), 3321-3336. Journal
23. Blumstein D. M., Campbell M. A., Hale M. C., Sutherland B. J. G., McKinney, G. J., Stott W., Larson W.A. Comparative genomic analyses and a novel linkage map for cisco (Coregonus artedi) provides insight into chromosomal evolution and rediploidization across salmonids. 2020 G3 - Genes|Genomes|Genetics. 10(8), 2863-2878. Journal
22. Beacham T.D., Jonsen K.M., McIntosh B., Sutherland B.J.G., Willis D., Lynch C., Wallace C.G. Large-scale parentage-based tagging and genetic stock identification applied in assessing mixed-stock fisheries and hatchery broodstocks for coho salmon in British Columbia, Canada. 2020. Canadian Journal of Fisheries and Aquatic Sciences. Early online June 6, 2020; Journal
21. Sutherland B. J. G., Rycroft C., Ferchaud A.-L., Saunders R., Li L., Liu S., Chan A., Otto S., Suttle C., Miller K.M, 2020. Relative genomic impacts of translocation history, hatchery practices, and farm selection in Pacific oyster Crassostrea gigas throughout the Northern Hemisphere. Evolutionary Applications. 13: 1380–1399. Journal
26. Esenkulova S., Sutherland B. J. G., Tabata A., Haigh N., Pearce C. M., Miller K. M. (2020). Comparing metabarcoding and morphological approaches to identify phytoplankton taxa associated with harmful algal blooms. FACETS. 5(1): 784-811. Journal, PDF
25. Sutherland B. J. G., Candy J., Mohns K., Cornies O., Jonsen K., Le K., Gustafson R. G., Nichols K. M., Beacham T.D (2020). Population structure of eulachon Thaleichthys pacificus from Northern California to Alaska using single nucleotide polymorphisms from direct amplicon sequencing. Canadian Journal of Fisheries and Aquatic Sciences. 78(1), 78-89. Journal
24. Akbarzadeh A., Houde A-L. S., Sutherland B. J. G., Gunther O. P., Miller K.M. 2020. Identification of hypoxia-specific biomarkers in salmonids using RNA-sequencing and validation using high-throughput qPCR. G3 - Genes|Genomes|Genetics. 10(9), 3321-3336. Journal
23. Blumstein D. M., Campbell M. A., Hale M. C., Sutherland B. J. G., McKinney, G. J., Stott W., Larson W.A. Comparative genomic analyses and a novel linkage map for cisco (Coregonus artedi) provides insight into chromosomal evolution and rediploidization across salmonids. 2020 G3 - Genes|Genomes|Genetics. 10(8), 2863-2878. Journal
22. Beacham T.D., Jonsen K.M., McIntosh B., Sutherland B.J.G., Willis D., Lynch C., Wallace C.G. Large-scale parentage-based tagging and genetic stock identification applied in assessing mixed-stock fisheries and hatchery broodstocks for coho salmon in British Columbia, Canada. 2020. Canadian Journal of Fisheries and Aquatic Sciences. Early online June 6, 2020; Journal
21. Sutherland B. J. G., Rycroft C., Ferchaud A.-L., Saunders R., Li L., Liu S., Chan A., Otto S., Suttle C., Miller K.M, 2020. Relative genomic impacts of translocation history, hatchery practices, and farm selection in Pacific oyster Crassostrea gigas throughout the Northern Hemisphere. Evolutionary Applications. 13: 1380–1399. Journal
Published Work
2019
20. Baillie S. M., McGowan C., May-McNally S., Leggatt R., Sutherland B. J. G., Robinson S., 2019. Environmental DNA and its application to Fisheries and Oceans Canada: National needs and priorities. Canadian Technical Report of Fisheries and Aquatic Sciences. 3329. Web and pdf
19. Sutherland B. J. G., Prokkola J. M., Audet C., Bernatchez L., 2019. Sex-specific co-expression networks and sex-biased gene expression in the salmonid Brook Charr Salvelinus fontinalis. G3 - Genes|Genomes|Genetics. 9(3), 955-968. Journal & pdf
2017
18. Moore J.-S., Harris L. N., Le Luyer J., Sutherland B. J. G., Rougemont Q., Tallman R. F., Fisk A. T., Bernatchez L., (2017) Genomics and telemetry suggest a role for migration harshness in determining overwintering habitat choice, but not gene flow, in anadromous Arctic Char. Mol. Ecol. 26(24), 6784-6800. Journal & Preprint
17. Poley J. D.*, Sutherland B. J. G.*, Fast M. D., Koop B. F. and Jones S. R. M (2017). Effects of the vertically transmitted microsporidian Facilispora margolisi and the parasiticide emamectin benzoate on salmon lice (Lepeophtheirus salmonis). BMC Genomics. 18, 630. *equal contribution pdf
16. Benestan L., Moore J.-S., Sutherland B. J. G, Le Luyer J., Maaroufi H., Rougeux C., Normandeau E., Rycroft N., Atema J. N., Harris, L., Tallman R. F., Greenwood, S. J., Clark, K. F., Bernatchez L., (2017). Sex matters in Massive Parallel Sequencing: Evidence for biases in genetic parameter estimation and investigation of sex determination systems. Molecular Ecology (from the cover). doi: 10.1111/mec.14217 pdf
15. Sutherland B. J. G., Rico C., Audet C. and Bernatchez L. (2017). Sex chromosome evolution, heterochiasmy and physiological QTL in the salmonid Brook Charr Salvelinus fontinalis. G3: Genes|Genomes|Genetics. 7(8), 2749-2762. https://doi.org/10.1534/g3.117.040915 pdf
14. Sutherland B. J. G.*, Covello J. M., Friend S. E., Poley J. D., Koczka K. W., Purcell S. L., MacLeod T. L., Donovan B. R., Pino J., González Vecino J. L., Gonzalez J., Troncosco J., Koop B. F., Wadsworth S. L. and Fast M. D. (2017). Host-parasite transcriptomics during immunostimulant enhanced rejection of salmon lice Lepeophtheirus salmonis by Atlantic Salmon Salmo salar. FACETS 2, 477-495. doi: 10.1139/facets-2017-0020. pdf
13. Narum S. R., Gallardo P., Correa C., Matala A., Hasselman D., Sutherland B. J. G. and Bernatchez L. (2017). Genomic patterns of diversity and divergence of two introduced salmonid species in Patagonia, South America. Evolutionary Applications, 10(4), 402-416. doi:10.1111/eva.12464. pdf
12. Braden L. M., Sutherland B. J. G., Koop B. F. and Jones S. R. M. (2017). Enhanced transcriptomic responses in the Pacific salmon louse Lepeophtheirus salmonis oncorhynchi to the non-native Atlantic Salmon Salmo salar, suggests increased parasite fitness. BMC Genomics 18, 110. pdf
20. Baillie S. M., McGowan C., May-McNally S., Leggatt R., Sutherland B. J. G., Robinson S., 2019. Environmental DNA and its application to Fisheries and Oceans Canada: National needs and priorities. Canadian Technical Report of Fisheries and Aquatic Sciences. 3329. Web and pdf
19. Sutherland B. J. G., Prokkola J. M., Audet C., Bernatchez L., 2019. Sex-specific co-expression networks and sex-biased gene expression in the salmonid Brook Charr Salvelinus fontinalis. G3 - Genes|Genomes|Genetics. 9(3), 955-968. Journal & pdf
2017
18. Moore J.-S., Harris L. N., Le Luyer J., Sutherland B. J. G., Rougemont Q., Tallman R. F., Fisk A. T., Bernatchez L., (2017) Genomics and telemetry suggest a role for migration harshness in determining overwintering habitat choice, but not gene flow, in anadromous Arctic Char. Mol. Ecol. 26(24), 6784-6800. Journal & Preprint
17. Poley J. D.*, Sutherland B. J. G.*, Fast M. D., Koop B. F. and Jones S. R. M (2017). Effects of the vertically transmitted microsporidian Facilispora margolisi and the parasiticide emamectin benzoate on salmon lice (Lepeophtheirus salmonis). BMC Genomics. 18, 630. *equal contribution pdf
16. Benestan L., Moore J.-S., Sutherland B. J. G, Le Luyer J., Maaroufi H., Rougeux C., Normandeau E., Rycroft N., Atema J. N., Harris, L., Tallman R. F., Greenwood, S. J., Clark, K. F., Bernatchez L., (2017). Sex matters in Massive Parallel Sequencing: Evidence for biases in genetic parameter estimation and investigation of sex determination systems. Molecular Ecology (from the cover). doi: 10.1111/mec.14217 pdf
15. Sutherland B. J. G., Rico C., Audet C. and Bernatchez L. (2017). Sex chromosome evolution, heterochiasmy and physiological QTL in the salmonid Brook Charr Salvelinus fontinalis. G3: Genes|Genomes|Genetics. 7(8), 2749-2762. https://doi.org/10.1534/g3.117.040915 pdf
14. Sutherland B. J. G.*, Covello J. M., Friend S. E., Poley J. D., Koczka K. W., Purcell S. L., MacLeod T. L., Donovan B. R., Pino J., González Vecino J. L., Gonzalez J., Troncosco J., Koop B. F., Wadsworth S. L. and Fast M. D. (2017). Host-parasite transcriptomics during immunostimulant enhanced rejection of salmon lice Lepeophtheirus salmonis by Atlantic Salmon Salmo salar. FACETS 2, 477-495. doi: 10.1139/facets-2017-0020. pdf
13. Narum S. R., Gallardo P., Correa C., Matala A., Hasselman D., Sutherland B. J. G. and Bernatchez L. (2017). Genomic patterns of diversity and divergence of two introduced salmonid species in Patagonia, South America. Evolutionary Applications, 10(4), 402-416. doi:10.1111/eva.12464. pdf
12. Braden L. M., Sutherland B. J. G., Koop B. F. and Jones S. R. M. (2017). Enhanced transcriptomic responses in the Pacific salmon louse Lepeophtheirus salmonis oncorhynchi to the non-native Atlantic Salmon Salmo salar, suggests increased parasite fitness. BMC Genomics 18, 110. pdf
2016 & earlier
11. Sutherland BJG, Gosselin T, Normandeau E, Lamothe M, Isabel N, Audet C, Bernatchez L. (2016). Salmonid chromosome evolution as revealed by a novel method for comparing RADseq linkage maps. Genome Biology and Evolution 8(12), 3600-3617. pdf
10. Poley JD, Sutherland BJG, Jones SRM, Koop BF and Fast MD (2016). Sex-biased gene expression and sequence conservation in Atlantic and Pacific salmon lice Lepeophtheirus salmonis. BMC Genomics 17, 483. pdf
11. Sutherland BJG, Gosselin T, Normandeau E, Lamothe M, Isabel N, Audet C, Bernatchez L. (2016). Salmonid chromosome evolution as revealed by a novel method for comparing RADseq linkage maps. Genome Biology and Evolution 8(12), 3600-3617. pdf
10. Poley JD, Sutherland BJG, Jones SRM, Koop BF and Fast MD (2016). Sex-biased gene expression and sequence conservation in Atlantic and Pacific salmon lice Lepeophtheirus salmonis. BMC Genomics 17, 483. pdf
9. Müller A., Sutherland B. J. G, Koop B. F., Johnson S. C., Garver K. A. (2015). Infectious hematopoietic virus (IHNV) persistence in Sockeye Salmon: influence on brain transcriptome and subsequent response to the viral mimic poly I:C. BMC Genomics 16, 634. pdf
8. Sutherland B. J. G., Poley J. D., Igboeli O. O., Jantzen J. R., Fast M. D., Koop B. F., Jones S. R. M. (2015). Transcriptomic responses to emamectin benzoate in Pacific and Atlantic Canada salmon lice Lepeophtheirus salmonis with differing levels of drug resistance. Evolutionary Applications 8(2), 133-148. pdf
7. Sutherland B. J. G., Hanson K. C., Jantzen J. R., Koop B. F. and Smith C. T. (2014). Divergent immunity and energetic programs in the gills of migratory and resident Oncorhynchus mykiss. Molecular Ecology 23(8), 1952-1964. pdf
6. Sutherland B. J. G., Koczka K. W., Yasuike M., Jantzen S. G., Yazawa R., Koop B. F. and Jones S. R. M. (2014). Comparative transcriptomics of Atlantic Salmo salar, chum Oncorhynchus keta and pink salmon O. gorbuscha during infections with salmon lice Lepeophtheirus salmonis. BMC Genomics 15, 200. pdf
5. Sahlmann C., Sutherland B. J. G., Kortner T. M., Koop B. F., Krogdahl A., Bakke A.M. (2013) Early response of gene expression in the distal intestine of Atlantic salmon (Salmo salar L.) during the development of soybean meal induced enteritis. Fish & Shellfish Immunology 34, 599-609. pdf
4. Sutherland B. J. G., Jantzen S. G., Yasuike M., Sanderson D. S., Koop B. F., Jones S. R. M. (2012) Transcriptomics of coping strategies in free-swimming Lepeophtheirus salmonis (Copepoda) larvae responding to abiotic stress. Molecular Ecology 21, 6000-6014. pdf
3. Jantzen S. G.*, Sutherland B. J. G.*, Minkley D. R., Koop B. F. (2011) GO Trimming: Systematically reducing redundancy in large Gene Ontology datasets. BMC Research Notes 4, 267. pdf *equal contribution
2. Pavey S. A., Sutherland B. J. G., Leong J., et al. (2011) Ecological transcriptomics of lake-type and riverine sockeye salmon (Oncorhynchus nerka). BMC Ecology 11, 31. pdf
1. Sutherland B. J. G., Jantzen S. G., Sanderson D. S., Koop B. F., Jones S. R. M. (2011) Differentiating size-dependent responses of juvenile pink salmon (Oncorhynchus gorbuscha) to sea lice (Lepeophtheirus salmonis) infections. Comparative Biochemistry and Physiology D- Genomics & Proteomics 6, 213-223. pdf
8. Sutherland B. J. G., Poley J. D., Igboeli O. O., Jantzen J. R., Fast M. D., Koop B. F., Jones S. R. M. (2015). Transcriptomic responses to emamectin benzoate in Pacific and Atlantic Canada salmon lice Lepeophtheirus salmonis with differing levels of drug resistance. Evolutionary Applications 8(2), 133-148. pdf
7. Sutherland B. J. G., Hanson K. C., Jantzen J. R., Koop B. F. and Smith C. T. (2014). Divergent immunity and energetic programs in the gills of migratory and resident Oncorhynchus mykiss. Molecular Ecology 23(8), 1952-1964. pdf
6. Sutherland B. J. G., Koczka K. W., Yasuike M., Jantzen S. G., Yazawa R., Koop B. F. and Jones S. R. M. (2014). Comparative transcriptomics of Atlantic Salmo salar, chum Oncorhynchus keta and pink salmon O. gorbuscha during infections with salmon lice Lepeophtheirus salmonis. BMC Genomics 15, 200. pdf
5. Sahlmann C., Sutherland B. J. G., Kortner T. M., Koop B. F., Krogdahl A., Bakke A.M. (2013) Early response of gene expression in the distal intestine of Atlantic salmon (Salmo salar L.) during the development of soybean meal induced enteritis. Fish & Shellfish Immunology 34, 599-609. pdf
4. Sutherland B. J. G., Jantzen S. G., Yasuike M., Sanderson D. S., Koop B. F., Jones S. R. M. (2012) Transcriptomics of coping strategies in free-swimming Lepeophtheirus salmonis (Copepoda) larvae responding to abiotic stress. Molecular Ecology 21, 6000-6014. pdf
3. Jantzen S. G.*, Sutherland B. J. G.*, Minkley D. R., Koop B. F. (2011) GO Trimming: Systematically reducing redundancy in large Gene Ontology datasets. BMC Research Notes 4, 267. pdf *equal contribution
2. Pavey S. A., Sutherland B. J. G., Leong J., et al. (2011) Ecological transcriptomics of lake-type and riverine sockeye salmon (Oncorhynchus nerka). BMC Ecology 11, 31. pdf
1. Sutherland B. J. G., Jantzen S. G., Sanderson D. S., Koop B. F., Jones S. R. M. (2011) Differentiating size-dependent responses of juvenile pink salmon (Oncorhynchus gorbuscha) to sea lice (Lepeophtheirus salmonis) infections. Comparative Biochemistry and Physiology D- Genomics & Proteomics 6, 213-223. pdf
Falls of Shin, Lairg, Scotland
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